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To create a new connection to a mongo database using SSL you open the window with all connections by clicking the "Connect" button. Here you click "New connection" and you will see the following prompt:

Name

A self-chosen name for the connection

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Only required with activated MongoDB authentication. Determines to which database should be connected . With disabled MongoDB authentication, all databases are always displayed.

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Root certificate chain from the Certificate Authority

The local port which is used for the SSH tunnel. The input is optional. The default value is computed by the system. But in case the computed port is already in use, you will get an error message. Then you can enter a different, not in use port here.

Certificate

The name of the SSH user in the destination server.

Certificate key

The SSH password.

Certificate passphrase

The absolute path to the private SSH key fileThis is required if certificate validation is selected. Enter either the absolute path to the .pem file that contains the root certificate chain from the Certificate Authority or the content of the file as text.

Certificate

Enter either the absolute path to the .pem/.crt file that contains the certificate or the content of the file as text.

Certificate key

Enter either the absolute path to the .pem/.key file that contains the certificate key or the content of the file as text. Only required when the key is not already included in the certificate file. 

Certificate passphrase

Only required when the certificate key is encrypted.

Default connection

Tags this connection as default. On each applications' start it is automatically connected to this connection. Can only be selected for one connection.

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After entering the data you can click "Save and connect". The connection using SSL will be established.